Baker Institute Publications Fiscal Year 2020
June 2020
Cosgrove Elissa J, Sadeghi Raheleh, Schlamp Florencia, Holl Heather M. Moradi-Shahrbabak Mohammad, Miraei-Ashtiani Seyed Reza, Adballa Salma, Shykind Ben, Troedsson Mats, Stefaniuk-Szmukier Monika, Prabhu Anil, Bucca Stefania, Bugno-Poniewiersak Monika, Wallmer Barbara, Malek Joel, Miller Donald C., Clark Andrew G, Antczak Douglas F., Brooks, Samantha A. Genome Diversity and the Origin of the Arabian Horse. Scientific Reports.16 June 2020
May 2020
Mukai Chinatsu; Eunju Choi; Sams Kelly L; Klampen Elena Zu; Anguish Lynne; Marks Brooke A; Rice Edward J; Wang Zhong; Choate Lauren A; Chou Shao-Pei; Kato Yukinari; Miller Andrew; Danko Charles G; Coonrod Scott A. Chromatin run-on sequencing analysis finds that ECM remodeling plays an important role in canine hemangiosarcoma pathogenesis. BMC Veterinary Research. 28 May 2020.
April 2020
Sharara Fady, Seaman Eric, Morris Randy, Schinfeld Jay, Nichols Jennifer, Sobel Michael, Lee Annette, Somkuti Stephen, Hirshberg Steven, Budinetz Tara, Barmat Larry, Palermo Gianpiero, Rosenwaks Zev, Bar-Chama Natan, Bodie Joshua, Nicholas John, Payne John, McCoy Travis, Tarnawa Edward, Whitman-Elia Gail, Weissman Lauren, Doukakis Maria, Hurwitz Joshua, Leondires Mark, Murdock Cynthia, Ressler Ilana, Richlin Spencer, Williams Shaun, Wosnitzer Matthew, Butcher Michael, Kashanian James, Ahlering Peter, Aubuchon Mira, Ostemeir G. Charles, Travis Alexander J. Multicentric, prospective observational data show sperm capacitation predicts male fertility, and cohort comparison reveals a high prevalence of impaired capacitation in men questioning their fertility. Reproductive Biomedicine Online (RBMO). Vol. 41, Issue 1, p69-79, 1 July 2020.
Barnard Karen N, Alford-Lawrence Brynn K, Buchholz David W, Wasik Brian R, LaClair Justin R, Yu Hai, Honce Rebekah, Ruhl Stefan, Pajic Petar, Daugherity Erin K, Chen Xi, Schultz-Cherry Stacey L, Aguilar Hector C, Varki Ajit, Parrish Colin R. Modified sialic acids on mucus and erythrocytes inhibit influenza A HA and NA functions. J Virol. 2020 Apr 16; ;94(9):e01567-19.
March 2020
Harman Rebecca M, Theoret Christine L, Van de Walle Gerlinde R. The Horse as a Model for the Study of Cutaneous Wound Healing. Advances in Wound Care. 20 Mar 2019.
Marx Charlotte, Gardner Sophia, Harman Rebecca M, Van de Walle Gerlinde R. The c stromal cell (MSC) secretome impairs methicillin-resistant Staphylococcus aureus (MRSA) biofilms via cysteine protease activity in the equine model. Stem Cells Transl Med. 2020 Mar 26.
Vengust Modest, Jager Mason C, Zalig Valetina, Cociancich Vasilij, Laverack Melissa, Renshaw Randall W, Dubovi Edward, Tomlinson Joy E, Van de Walle Gerlinde R, Divers Thomas J. First report of Equine Parvovirus-Hepatitis-associated Theiler’s disease in Europe. Equine Vet. Journal BEVA. 2020 Mar 07.
Tomlinson Joy E, Jager Mason, Struzyna Alyssa, Lavrack Melissa, Fortier Lisa A, Dubovi Edward, Foil Lane D, Burbelo Peter D, Divers Thomas J, Van de Walle Gerlinde R. Tropism, pathology, and transmission of equine parvovirus-hepatitis. Emerging Microbes & Infections. 2020 Mar 20, 651-663.
February 2020
Nguyen Tri., Lee, Sohyoung, Yang Yi-An, Ahn Changwan, Sim Ji Hyun, Kei Tiffany G., Barnard Karnard N, Yu Hai, Millano Shawn K, Chen Xi, Parrish, Colin R, Song, Jeongmin. The role of 9-O-acetylated glycan receptor moieties in the typhoid toxin binding and intoxication. PLoS Pathog. 2020 Feb 21;16(2).
December 2019
Wasik Brian R, Voorhees Ian EH, Barnard Karen N, Alford-Lawrence Brynn K, Weichert Wendy S, Hood Grace, Nogales Aitor, Martínez-Sobrido Luis, Holmes Edward C, Parrish Colin R. Influenza Viruses in Mice: Deep Sequencing Analysis of Serial Passage and Effects of Sialic Acid Structural Variation. J Virol. 2019 Dec 1;93(23).
Barnard Karen N, Wasik Brian R, LaClair JR, Buchholz DW, Weichert Wendy S, Alford-Lawrence Brynn K, Aguilar Hector C, Parrish Colin R. Expression of 9-O- and 7,9-O-Acetyl Modified Sialic Acid in Cells and Their Effects on Influenza Viruses. mBio. 2019 Dec 3;10(6).
Wasik Brian R, Voorhees Ian EH, Parrish Colin R. Canine and Feline Influenza. Cold Spring Harb Perspect Med. 2019 Dec 30;
Voorhees Ian EH, Lee Hyunwook, Allison Andrew B, Lopez-Astacio Robert, Goodman Laura B, Oyesola Oyebola O, Omobowale Omobowale, Fagbohun Olusegun, Dubovi Edward J, Hafenstein Susan L, Holmes Edward C, Parrish Colin R. Limited Intrahost Diversity and Background Evolution Accompany 40 Years of Canine Parvovirus Host Adaptation and Spread. J Virol. 2019 Dec 12;94(1).
Kshitiz, Afzal Junaid, Maziarz Jamie D, Hamidzadeh Archer, Liang Cong, Erkenbrack Eric M, Kim Hong Nam, Haeger Jan-Dirk, Pfarrer Christiane, Hoang Thomas, Ott Troy, Spencer Thomas, Pavličev Mihaela, Antczak Douglas F, Levchenko Andrea, Wagner Günter P. Evolution of placental invasion and cancer metastasis are causally linked. Nat Ecol Evol. 2019 Dec;3(12):1743-1753.
November 2019
McGregor Douglas D, Fraser David R, Parker John SL. Tracking Veterinary Students Who Aspire to Careers in Science. J Vet Med Educ. 2019 Mar 28;1-6.
Hu MiYao, Depledge Daniel P, Cortes Esteban F, Breuer Judith, Schang Luis M. Chromatin dynamics and the transcriptional competence of HSV-1 genomes during lytic infections. PLOS Pathogens. 2019 Nov 14;15(11).
Holmes Camille M, Violette Nathaniel, Miller Donald, Wagner Bettina, Svansson Vihjalmur, Antczak Douglas F. MHC haplotype diversity in Icelandic horses determined by polymorphic microsatellites. Genes Immun. 2019 Nov;20(8):660-670.
October 2019
Lu Yen-Chu, Chu Tinyi, Hall Matthew S, Fu Dah-Jiun, Shi Qquanming, Chiu Alan, An Duo, Wang Long-Hai, Pardo Yehudah, Southard Teresa, Danko Charles G, Liphardt Jan, Nikitin Alexander Y, Wu Mingming, Fischbach Claudia, Coonrod Scott, Ma Minglin. (2019). Physical confinement induces malignant transformation in mammary epithelial cells. Biomaterials. 2019 Oct;217:119307.
Lee Hyunhook, Callaway Heather M, Cifuente Javier O, Bator Carol M, Parrish Colin R, Hafenstein Susan L. Transferrin receptor binds virus capsid with dynamic motion. Proc Natl Acad Sci U S A. 2019 Oct 8;116(41):20462-20471.
September 2019
Ray Judhajeet*, Munn Paul R*, Vihervaara Anniina, Lewis James J, Ozer Abdullah¥, Danko Charles G¥, Lis JT¥ (2019). Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock. Proc Natl Acad Sci U S A. 2019 Sep 10. pii: 201901244.
Tramontano Enzo, Tarbet Bart, Spengler Jessica R, Seley-Radtke Katherine, Meier Chris, Jordan Robert, Janeba Zlatko, Gowen Brian, Gentry Brian, Esté Jose A, Bray Mike, Andrei Graciela, Schang Luis M; on behalf of the International Society for Antiviral Research – ISAR. Meeting report: 32nd International conference on antiviral research. Antiviral Res. 2019 Sep;169:104550.
Wasik Brian R, de Wit Emmie, Munster Vincent, Lloyd-Smith James O, Martinez-Sobrido Luis, Parrish Colin R. Onward transmission of viruses: how do viruses emerge to cause epidemics after spillover?. Philos Trans R Soc Lond B Biol Sci. 2019 Sep 30;374(1782):20190017.
Wasik Brian R, Voorhees Ian EH, Barnard Karen N, Alford-Lawrence Brynn K, Weichert Wendy S, Hood Grace, Nogales Aitor, Martínez-Sobrido Luis, Holmes Edward C, Parrish Colin R, Influenza Viruses in Mice: Deep Sequencing Analysis of Serial Passage and Effects of Sialic Acid Structural Variation. Journal of Virology. 11 Sep 2019
Pepin, Kim M, Hopken Matthew W, Shriner Susan A, Spackman Erica, Abdo, Zaid, Parrish Colin, Riley, Steven, Lloyd-Smith, James O, Piaggio Antoinette J. Improving risk assessment of the emergence of novel influenza A viruses by incorporating environmental surveillance. Philos Trans R Soc Lond B Biol Sci. 2019 Sep 30;374(1782):20180346
August 2019
Tomlinson Joy E, Van de Walle Gerlinde R, Divers Thomas J. What do we know about hepatitis viruses in horses? Vet Clin North Am Equine Pract. 2019 Aug; 35(2):351-362.
Mishra Neha, Schwerdtner Lidja, Sams Kelly, Mondal Santanu, Ahmad Fareed, Schmidt Reinhold E, Coonrod Scott A, Thompson Paul R, Lerch Markus M, Bossaller Lukas. Cutting Edge: Protein Arginine Deiminase 2 and 4 Regulate NLRP3 Inflammasome-Dependent IL-1β Maturation and ASC Speck Formation in Macrophages. J Immunol. 2019 Aug 15;203(4):795-800.
July 2019
Chou Shao-Pei, Danko Charles G¥ (2019). AlleleHMM: a data-driven method to identify allele-specific differences in distributed functional genomic marks. Nucleic Acids Research. 2019 June 20;47(11)
Bensing Barbara A, Li Liang, Yakovenko Olga, Wong Maurice, Barnard Karen N, Iverson Tina M, Lebrilla Carlito B, Parrish Colin R, Thomas Wendy E, Xiong Yan, Sullam Paul M. Recognition of specific sialoglycan structures by oral streptococci impacts the severity of endocardial infection. PLoS Pathog. 2019 Jun;15(6):e1007896.
Goetschius Daniel J, Parrish Colin R, Hafenstein Susan. Asymmetry in icosahedral viruses. Curr Opin Virol. 2019 Jun 27;36:67-73.
Parrish Colin R, Voorhees Ian EH. H3N8 and H3N2 Canine Influenza Viruses: Understanding These New Viruses in Dogs. Vet Clin North Am Small Anim Pract. 2019 Jul;49(4):643-649.